The game has protagonist Gabe Logan sent on a mission to retrieve a package containing a dangerous new technology within a ship's cargo hold. While there, Gabe discovers that the ship has been ambushed and the package stolen. Robert Cordell, the governmental bureaucrat in charge of the IPCA, is shutting down the agency due to the failed mission and because Gabe's long-time partner, Lian Xing, has disappeared and is suspected of being a double agent. In disbelief, Gabe acts alone, traveling the world in order to find Lian and recover the stolen technology.
Logan's shadow, like dark mirror is a third person shooter game that can be played as either a stealth or action game. Underwater levels make an aperance with their own weapons, puzzles and 3D movement.